Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.61■□□□□ 0.73
COL2A1P02458 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.61■□□□□ 0.73
COL2A1P02458 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.61■□□□□ 0.73
COL2A1P02458 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.61■□□□□ 0.73
COL2A1P02458 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC19.61■□□□□ 0.73
COL2A1P02458 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.61■□□□□ 0.73
COL2A1P02458 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.61■□□□□ 0.73
COL2A1P02458 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.61■□□□□ 0.73
COL2A1P02458 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL2A1P02458 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
COL2A1P02458 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 AL671710.1-201ENST00000610245 2349 ntBASIC19.61■□□□□ 0.73
COL2A1P02458 AL035456.1-201ENST00000456064 1369 ntBASIC19.61■□□□□ 0.73
COL2A1P02458 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL2A1P02458 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.61■□□□□ 0.73
COL2A1P02458 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.6■□□□□ 0.73
COL2A1P02458 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.6■□□□□ 0.73
COL2A1P02458 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 AC190387.1-201ENST00000551683 408 ntBASIC19.6■□□□□ 0.73
COL2A1P02458 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL2A1P02458 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
COL2A1P02458 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.6■□□□□ 0.73
COL2A1P02458 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.6■□□□□ 0.73
COL2A1P02458 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.6■□□□□ 0.73
COL2A1P02458 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.6■□□□□ 0.73
COL2A1P02458 AL138828.2-201ENST00000615812 383 ntBASIC19.6■□□□□ 0.73
COL2A1P02458 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL2A1P02458 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL2A1P02458 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.59■□□□□ 0.73
COL2A1P02458 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.59■□□□□ 0.73
COL2A1P02458 AL353705.2-201ENST00000428243 662 ntBASIC19.59■□□□□ 0.73
COL2A1P02458 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.59■□□□□ 0.73
COL2A1P02458 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.59■□□□□ 0.73
COL2A1P02458 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL2A1P02458 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms