Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.56■□□□□ 0.56
CLDN3O15551 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.56■□□□□ 0.56
CLDN3O15551 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CLDN3O15551 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 FAM185BP-201ENST00000443595 716 ntBASIC18.56■□□□□ 0.56
CLDN3O15551 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.56■□□□□ 0.56
CLDN3O15551 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLDN3O15551 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.56■□□□□ 0.56
CLDN3O15551 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CLDN3O15551 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CLDN3O15551 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLDN3O15551 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
CLDN3O15551 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CLDN3O15551 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.55■□□□□ 0.56
CLDN3O15551 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 AC107918.2-201ENST00000530817 355 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 AC040169.1-201ENST00000565382 521 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 AC018845.2-201ENST00000568326 409 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLDN3O15551 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.55■□□□□ 0.56
CLDN3O15551 REXO1L3P-201ENST00000622202 1288 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 AC010507.1-201ENST00000633895 436 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CLDN3O15551 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.55■□□□□ 0.56
CLDN3O15551 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLDN3O15551 AL021920.2-201ENST00000624828 1351 ntBASIC18.55■□□□□ 0.56
CLDN3O15551 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.55■□□□□ 0.56
CLDN3O15551 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.54■□□□□ 0.56
CLDN3O15551 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.54■□□□□ 0.56
CLDN3O15551 RHOQP3-201ENST00000437982 621 ntBASIC18.54■□□□□ 0.56
CLDN3O15551 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.54■□□□□ 0.56
CLDN3O15551 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.54■□□□□ 0.56
CLDN3O15551 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.54■□□□□ 0.56
CLDN3O15551 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.54■□□□□ 0.56
CLDN3O15551 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms