Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
UBFD1O14562 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
UBFD1O14562 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.51■□□□□ 0.23
UBFD1O14562 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.51■□□□□ 0.23
UBFD1O14562 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.51■□□□□ 0.23
UBFD1O14562 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 AC099336.1-202ENST00000602961 463 ntBASIC16.51■□□□□ 0.23
UBFD1O14562 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.5■□□□□ 0.23
UBFD1O14562 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 AL590787.1-201ENST00000568856 1315 ntBASIC16.5■□□□□ 0.23
UBFD1O14562 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 AC012615.1-201ENST00000565797 1299 ntBASIC16.5■□□□□ 0.23
UBFD1O14562 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 AP000550.4-202ENST00000639755 178 ntBASIC16.5■□□□□ 0.23
UBFD1O14562 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
UBFD1O14562 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
UBFD1O14562 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.5■□□□□ 0.23
UBFD1O14562 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.5■□□□□ 0.23
UBFD1O14562 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.5■□□□□ 0.23
UBFD1O14562 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
UBFD1O14562 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
UBFD1O14562 NUS1P2-201ENST00000417358 873 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 AL513523.2-202ENST00000427283 2040 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms