Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM38O00635 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRIM38O00635 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 AC006504.4-201ENST00000592118 1568 ntBASIC17.15■□□□□ 0.34
TRIM38O00635 AL049757.1-201ENST00000616842 1596 ntBASIC17.15■□□□□ 0.34
TRIM38O00635 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM38O00635 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM38O00635 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 ELK2BP-201ENST00000415014 1224 ntBASIC17.15■□□□□ 0.34
TRIM38O00635 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.15■□□□□ 0.34
TRIM38O00635 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM38O00635 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM38O00635 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM38O00635 AL353593.2-201ENST00000602529 1483 ntBASIC17.15■□□□□ 0.34
TRIM38O00635 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRIM38O00635 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM38O00635 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM38O00635 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM38O00635 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.14■□□□□ 0.34
TRIM38O00635 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.14■□□□□ 0.34
TRIM38O00635 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRIM38O00635 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.14■□□□□ 0.34
TRIM38O00635 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 AC148477.5-201ENST00000625164 1645 ntBASIC17.14■□□□□ 0.33
TRIM38O00635 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRIM38O00635 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TRIM38O00635 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TRIM38O00635 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.14■□□□□ 0.33
TRIM38O00635 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM38O00635 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM38O00635 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM38O00635 LINC00304-203ENST00000565008 1864 ntBASIC17.14■□□□□ 0.33
TRIM38O00635 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.14■□□□□ 0.33
TRIM38O00635 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM38O00635 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.13■□□□□ 0.33
TRIM38O00635 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM38O00635 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM38O00635 HMGN1P19-201ENST00000436976 333 ntBASIC17.13■□□□□ 0.33
TRIM38O00635 DNAJB3-202ENST00000449667 1266 ntBASIC17.13■□□□□ 0.33
TRIM38O00635 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM38O00635 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM38O00635 AC027796.2-201ENST00000575326 344 ntBASIC17.13■□□□□ 0.33
TRIM38O00635 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM38O00635 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM38O00635 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM38O00635 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms