Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC010331.1-201ENST00000611423 582 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 NPAP1P7-201ENST00000613027 823 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
SLC28A1O00337 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.39■□□□□ 0.22
SLC28A1O00337 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC28A1O00337 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SLC28A1O00337 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC28A1O00337 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.39■□□□□ 0.21
SLC28A1O00337 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC28A1O00337 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC28A1O00337 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SLC28A1O00337 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SLC28A1O00337 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC28A1O00337 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC28A1O00337 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC28A1O00337 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.38■□□□□ 0.21
SLC28A1O00337 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SLC28A1O00337 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 NUS1P2-201ENST00000417358 873 ntBASIC16.38■□□□□ 0.21
SLC28A1O00337 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC28A1O00337 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC28A1O00337 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SLC28A1O00337 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 DOC2GP-204ENST00000639052 2548 ntBASIC16.38■□□□□ 0.21
SLC28A1O00337 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC28A1O00337 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.37■□□□□ 0.21
SLC28A1O00337 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.37■□□□□ 0.21
SLC28A1O00337 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ATP5G2P1-201ENST00000433580 426 ntBASIC16.37■□□□□ 0.21
SLC28A1O00337 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.37■□□□□ 0.21
SLC28A1O00337 PRYP5-201ENST00000451909 266 ntBASIC16.37■□□□□ 0.21
SLC28A1O00337 KRT16P4-201ENST00000453883 522 ntBASIC16.37■□□□□ 0.21
SLC28A1O00337 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms