Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 BX842568.4-201ENST00000421222 227 ntBASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC092865.5-201ENST00000545435 363 ntBASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC124947.2-201ENST00000547118 1133 ntBASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC002347.1-201ENST00000569543 541 ntBASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC092068.3-201ENST00000587894 2016 ntBASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX9Q9Y5X1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AC012313.1-201ENST00000593393 3059 ntBASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AL513480.1-201ENST00000451731 511 ntBASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 DUX4L17-201ENST00000557360 1267 ntBASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AC023141.13-201ENST00000604991 943 ntBASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AC007064.4-201ENST00000637740 555 ntBASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.18■□□□□ 0.5
SNX9Q9Y5X1 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 AC025580.3-201ENST00000617932 1424 ntBASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 KRT19P2-202ENST00000557173 1012 ntBASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SNX9Q9Y5X1 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms