Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 AC024909.3-201ENST00000611513 2257 ntBASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 AL358472.4-201ENST00000633140 710 ntBASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 FER1L4-210ENST00000615531 5998 ntBASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HHLA3Q9XRX5 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AC096633.1-201ENST00000422446 749 ntBASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HHLA3Q9XRX5 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HHLA3Q9XRX5 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HHLA3Q9XRX5 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms