Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 KRT17P7-201ENST00000451704 1104 ntBASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC21.68■■□□□ 1.06
SHANK3Q9BYB0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 AL671710.1-201ENST00000610245 2349 ntBASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 AC138969.3-201ENST00000546612 1459 ntBASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 AC138932.2-201ENST00000548268 1459 ntBASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 AC126755.4-201ENST00000549796 1459 ntBASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.67■■□□□ 1.06
SHANK3Q9BYB0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 GPR53P-205ENST00000457298 1084 ntBASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 RN7SL837P-201ENST00000463010 287 ntBASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 AC105021.1-202ENST00000570572 669 ntBASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 NOP2-211ENST00000540228 668 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 AC013467.2-201ENST00000605472 835 ntBASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 SPTSSB-204ENST00000617024 1292 ntBASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK3Q9BYB0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 AC061975.2-201ENST00000581722 295 ntBASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 AL589739.1-201ENST00000607720 493 ntBASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms