Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC002558.1-201ENST00000488906 803 ntBASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC023310.3-201ENST00000557027 670 ntBASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC100756.1-201ENST00000562736 682 ntBASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC138749.3-201ENST00000567691 622 ntBASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC116165.1-201ENST00000611806 668 ntBASIC16.61■□□□□ 0.25
VPS13AQ96RL7 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 FXNP2-201ENST00000411625 547 ntBASIC16.6■□□□□ 0.25
VPS13AQ96RL7 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13AQ96RL7 AL589739.1-201ENST00000607720 493 ntBASIC16.6■□□□□ 0.25
VPS13AQ96RL7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AC005412.3-201ENST00000580309 715 ntBASIC16.59■□□□□ 0.25
VPS13AQ96RL7 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AC093004.1-201ENST00000508850 424 ntBASIC16.59■□□□□ 0.25
VPS13AQ96RL7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13AQ96RL7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.58■□□□□ 0.25
VPS13AQ96RL7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS13AQ96RL7 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS13AQ96RL7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms