Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC42Q96M95 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC42Q96M95 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC42Q96M95 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC42Q96M95 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC42Q96M95 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC42Q96M95 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC42Q96M95 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AL391256.1-201ENST00000443260 1855 ntBASIC18.4■□□□□ 0.54
CCDC42Q96M95 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AC211429.1-201ENST00000415277 523 ntBASIC18.4■□□□□ 0.54
CCDC42Q96M95 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 VENTXP7-201ENST00000475503 772 ntBASIC18.4■□□□□ 0.54
CCDC42Q96M95 AC011467.2-201ENST00000598425 242 ntBASIC18.4■□□□□ 0.54
CCDC42Q96M95 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 AC073592.5-201ENST00000624854 528 ntBASIC18.4■□□□□ 0.54
CCDC42Q96M95 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
CCDC42Q96M95 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC42Q96M95 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.39■□□□□ 0.54
CCDC42Q96M95 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.39■□□□□ 0.54
CCDC42Q96M95 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CCDC42Q96M95 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC42Q96M95 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC42Q96M95 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC42Q96M95 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC42Q96M95 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC42Q96M95 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC42Q96M95 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AC092364.2-201ENST00000596710 2692 ntBASIC18.38■□□□□ 0.53
CCDC42Q96M95 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AL136038.3-201ENST00000561909 1096 ntBASIC18.38■□□□□ 0.53
CCDC42Q96M95 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms