Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 YBX1P10-201ENST00000444752 975 ntBASIC10.59□□□□□ -0.71
LINC00643Q86TS7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 AC124947.2-201ENST00000547118 1133 ntBASIC10.59□□□□□ -0.71
LINC00643Q86TS7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 AC116407.2-201ENST00000613639 860 ntBASIC10.59□□□□□ -0.71
LINC00643Q86TS7 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 DMBT1P1-203ENST00000636837 4628 ntBASIC10.59□□□□□ -0.71
LINC00643Q86TS7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 REXO1L1P-202ENST00000608646 1974 ntBASIC10.59□□□□□ -0.71
LINC00643Q86TS7 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 SUPT20HL2-201ENST00000486479 2409 ntBASIC10.58□□□□□ -0.72
LINC00643Q86TS7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC10.58□□□□□ -0.72
LINC00643Q86TS7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 AC010980.1-201ENST00000587192 1142 ntBASIC10.58□□□□□ -0.72
LINC00643Q86TS7 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
LINC00643Q86TS7 OS9-204ENST00000389146 2091 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms