Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC010507.1-201ENST00000633895 436 ntBASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 BCAR1-209ENST00000546196 1340 ntBASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AC105020.1-201ENST00000435356 2205 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AC009336.1-201ENST00000608941 1553 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AC092474.2-201ENST00000424288 719 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AP000344.2-201ENST00000512987 629 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 KRT19P2-202ENST00000557173 1012 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 AL135999.2-201ENST00000622438 1686 ntBASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SH3RF1Q7Z6J0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 AC005498.2-205ENST00000593218 784 ntBASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SH3RF1Q7Z6J0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 AC005915.1-201ENST00000624912 2018 ntBASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 AC124947.2-201ENST00000547118 1133 ntBASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms