Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 SAPCD2P3-201ENST00000455031 850 ntBASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 KRT18P56-201ENST00000507275 550 ntBASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 TERC-201ENST00000602385 541 ntBASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 IFNL4P1-201ENST00000607083 540 ntBASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 AL139424.1-201ENST00000607572 797 ntBASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF549Q6P9A3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
ZNF549Q6P9A3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF549Q6P9A3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF549Q6P9A3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF549Q6P9A3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF549Q6P9A3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 AC025062.2-201ENST00000605477 670 ntBASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ZNF549Q6P9A3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 AC021087.4-201ENST00000563761 564 ntBASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 AC004706.3-202ENST00000621574 984 ntBASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms