Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 AC003669.1-201ENST00000334569 611 ntBASIC15.53■□□□□ 0.08
NIPAL3Q6P499 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 STK25P1-201ENST00000585406 838 ntBASIC15.53■□□□□ 0.08
NIPAL3Q6P499 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 AC092171.3-201ENST00000610122 2651 ntBASIC15.53■□□□□ 0.08
NIPAL3Q6P499 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NIPAL3Q6P499 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 PKD1P5-201ENST00000532415 10291 ntBASIC15.52■□□□□ 0.08
NIPAL3Q6P499 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 IFNL4P1-201ENST00000607083 540 ntBASIC15.52■□□□□ 0.08
NIPAL3Q6P499 AP000867.4-201ENST00000641616 219 ntBASIC15.52■□□□□ 0.08
NIPAL3Q6P499 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NIPAL3Q6P499 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 AC132938.5-201ENST00000624980 1813 ntBASIC15.52■□□□□ 0.07
NIPAL3Q6P499 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.52■□□□□ 0.07
NIPAL3Q6P499 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.51■□□□□ 0.07
NIPAL3Q6P499 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms