Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AC022188.1-201ENST00000620960 1664 ntBASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AC144831.1-201ENST00000573312 2656 ntBASIC15.29■□□□□ 0.04
CCDC58Q4VC31 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AL138966.2-201ENST00000621997 464 ntBASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 RNF216P1-203ENST00000404404 2427 ntBASIC15.29■□□□□ 0.04
CCDC58Q4VC31 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC58Q4VC31 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AC104640.1-201ENST00000562617 2109 ntBASIC15.28■□□□□ 0.04
CCDC58Q4VC31 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 KRT18P22-201ENST00000402024 1347 ntBASIC15.28■□□□□ 0.04
CCDC58Q4VC31 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AP003733.1-201ENST00000491725 852 ntBASIC15.28■□□□□ 0.04
CCDC58Q4VC31 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 AC140113.3-201ENST00000605663 199 ntBASIC15.28■□□□□ 0.04
CCDC58Q4VC31 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC58Q4VC31 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms