Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 ELL2P1-201ENST00000413990 1906 ntBASIC16.79■□□□□ 0.28
SRP54P61011 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.79■□□□□ 0.28
SRP54P61011 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
SRP54P61011 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SRP54P61011 CEND1P1-201ENST00000451006 455 ntBASIC16.79■□□□□ 0.28
SRP54P61011 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.79■□□□□ 0.28
SRP54P61011 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 GNAS-203ENST00000306120 1878 ntBASIC16.79■□□□□ 0.28
SRP54P61011 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
SRP54P61011 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SRP54P61011 AC016396.2-201ENST00000562575 1417 ntBASIC16.79■□□□□ 0.28
SRP54P61011 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SRP54P61011 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.78■□□□□ 0.28
SRP54P61011 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.78■□□□□ 0.28
SRP54P61011 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.78■□□□□ 0.28
SRP54P61011 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.78■□□□□ 0.28
SRP54P61011 FAM58CP-201ENST00000435741 640 ntBASIC16.78■□□□□ 0.28
SRP54P61011 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.78■□□□□ 0.28
SRP54P61011 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SRP54P61011 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SRP54P61011 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SRP54P61011 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SRP54P61011 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
SRP54P61011 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SRP54P61011 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.77■□□□□ 0.28
SRP54P61011 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SRP54P61011 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.77■□□□□ 0.28
SRP54P61011 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.77■□□□□ 0.28
SRP54P61011 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.77■□□□□ 0.28
SRP54P61011 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.77■□□□□ 0.28
SRP54P61011 SNHG9-202ENST00000564014 471 ntBASIC16.77■□□□□ 0.28
SRP54P61011 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.77■□□□□ 0.28
SRP54P61011 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.77■□□□□ 0.28
SRP54P61011 AC068137.2-201ENST00000605408 478 ntBASIC16.77■□□□□ 0.28
SRP54P61011 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.77■□□□□ 0.28
SRP54P61011 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.77■□□□□ 0.28
SRP54P61011 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SRP54P61011 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.77■□□□□ 0.28
SRP54P61011 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SRP54P61011 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SRP54P61011 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SRP54P61011 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SRP54P61011 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SRP54P61011 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SRP54P61011 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SRP54P61011 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms