Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIMK1P53667 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIMK1P53667 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIMK1P53667 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
LIMK1P53667 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.78■□□□□ 0.28
LIMK1P53667 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIMK1P53667 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.78■□□□□ 0.28
LIMK1P53667 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIMK1P53667 SPCS2P4-201ENST00000436160 681 ntBASIC16.78■□□□□ 0.28
LIMK1P53667 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 SPDYE14P-201ENST00000442619 822 ntBASIC16.78■□□□□ 0.28
LIMK1P53667 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.78■□□□□ 0.28
LIMK1P53667 AL161645.1-201ENST00000622716 1255 ntBASIC16.78■□□□□ 0.28
LIMK1P53667 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.78■□□□□ 0.28
LIMK1P53667 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LIMK1P53667 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.78■□□□□ 0.28
LIMK1P53667 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
LIMK1P53667 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIMK1P53667 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
LIMK1P53667 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 AC004890.2-204ENST00000481968 304 ntBASIC16.77■□□□□ 0.28
LIMK1P53667 IGHV3-62-201ENST00000520057 340 ntBASIC16.77■□□□□ 0.28
LIMK1P53667 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.77■□□□□ 0.28
LIMK1P53667 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.77■□□□□ 0.28
LIMK1P53667 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.77■□□□□ 0.28
LIMK1P53667 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIMK1P53667 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.77■□□□□ 0.28
LIMK1P53667 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.77■□□□□ 0.27
LIMK1P53667 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.77■□□□□ 0.27
LIMK1P53667 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.77■□□□□ 0.27
LIMK1P53667 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
LIMK1P53667 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.77■□□□□ 0.27
LIMK1P53667 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIMK1P53667 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIMK1P53667 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
LIMK1P53667 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.77■□□□□ 0.27
LIMK1P53667 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIMK1P53667 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.76■□□□□ 0.27
LIMK1P53667 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
LIMK1P53667 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 AC241585.1-201ENST00000433527 519 ntBASIC16.76■□□□□ 0.27
LIMK1P53667 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 GPR53P-205ENST00000457298 1084 ntBASIC16.76■□□□□ 0.27
LIMK1P53667 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.76■□□□□ 0.27
LIMK1P53667 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.76■□□□□ 0.27
LIMK1P53667 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.76■□□□□ 0.27
LIMK1P53667 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms