Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 RN7SL618P-201ENST00000477850 296 ntBASIC23.28■■□□□ 1.32
MSH6P52701 PRYP6-201ENST00000514804 343 ntBASIC23.28■■□□□ 1.32
MSH6P52701 NEU3-203ENST00000529024 581 ntTSL 3 BASIC23.28■■□□□ 1.32
MSH6P52701 AL079307.3-201ENST00000556114 283 ntBASIC23.28■■□□□ 1.32
MSH6P52701 MIR4538-201ENST00000581377 78 ntBASIC23.28■■□□□ 1.32
MSH6P52701 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
MSH6P52701 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH6P52701 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH6P52701 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH6P52701 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH6P52701 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
MSH6P52701 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH6P52701 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH6P52701 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
MSH6P52701 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH6P52701 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
MSH6P52701 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
MSH6P52701 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH6P52701 AL133215.2-201ENST00000609242 977 ntBASIC23.27■■□□□ 1.32
MSH6P52701 MIR6787-201ENST00000616675 61 ntBASIC23.27■■□□□ 1.32
MSH6P52701 MIR6775-201ENST00000617557 69 ntBASIC23.27■■□□□ 1.32
MSH6P52701 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 PFAS-212ENST00000625942 396 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH6P52701 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH6P52701 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH6P52701 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH6P52701 LINC00895-201ENST00000629028 1637 ntBASIC23.27■■□□□ 1.32
MSH6P52701 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH6P52701 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC23.27■■□□□ 1.31
MSH6P52701 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
MSH6P52701 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
MSH6P52701 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.31
MSH6P52701 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
MSH6P52701 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC23.27■■□□□ 1.31
MSH6P52701 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC23.27■■□□□ 1.31
MSH6P52701 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC23.27■■□□□ 1.31
MSH6P52701 AC105021.1-202ENST00000570572 669 ntBASIC23.27■■□□□ 1.31
MSH6P52701 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
MSH6P52701 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH6P52701 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
MSH6P52701 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
MSH6P52701 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
MSH6P52701 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH6P52701 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH6P52701 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
MSH6P52701 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 AC092933.1-201ENST00000393644 945 ntBASIC23.26■■□□□ 1.31
MSH6P52701 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH6P52701 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC23.26■■□□□ 1.31
MSH6P52701 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
MSH6P52701 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC23.25■■□□□ 1.31
MSH6P52701 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC23.25■■□□□ 1.31
MSH6P52701 KRT8P44-201ENST00000441609 1350 ntBASIC23.25■■□□□ 1.31
MSH6P52701 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC23.25■■□□□ 1.31
MSH6P52701 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 BCYRN1-201ENST00000418539 200 ntBASIC23.25■■□□□ 1.31
MSH6P52701 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC23.25■■□□□ 1.31
MSH6P52701 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC23.25■■□□□ 1.31
MSH6P52701 BNIP3P42-201ENST00000454982 569 ntBASIC23.25■■□□□ 1.31
MSH6P52701 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC23.25■■□□□ 1.31
MSH6P52701 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms