Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 HLA-H-201ENST00000383620 1096 ntBASIC16.8■□□□□ 0.28
CXCL12P48061 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.8■□□□□ 0.28
CXCL12P48061 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.8■□□□□ 0.28
CXCL12P48061 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.8■□□□□ 0.28
CXCL12P48061 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.8■□□□□ 0.28
CXCL12P48061 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.8■□□□□ 0.28
CXCL12P48061 AC009407.1-201ENST00000568958 598 ntBASIC16.8■□□□□ 0.28
CXCL12P48061 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.8■□□□□ 0.28
CXCL12P48061 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.8■□□□□ 0.28
CXCL12P48061 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.8■□□□□ 0.28
CXCL12P48061 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.8■□□□□ 0.28
CXCL12P48061 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CXCL12P48061 CETN4P-206ENST00000642099 2168 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CXCL12P48061 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.79■□□□□ 0.28
CXCL12P48061 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
CXCL12P48061 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CXCL12P48061 AC022494.1-201ENST00000466044 728 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 GIMAP3P-201ENST00000495150 836 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 API5-211ENST00000534695 560 ntTSL 5 BASIC16.79■□□□□ 0.28
CXCL12P48061 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 AC008738.7-201ENST00000609744 511 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 MIR6799-201ENST00000620297 69 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CXCL12P48061 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CXCL12P48061 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.79■□□□□ 0.28
CXCL12P48061 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL12P48061 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL12P48061 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL12P48061 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL12P48061 MTND6P24-201ENST00000440466 518 ntBASIC16.78■□□□□ 0.28
CXCL12P48061 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL12P48061 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL12P48061 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 AL589739.1-201ENST00000607720 493 ntBASIC16.78■□□□□ 0.28
CXCL12P48061 TEX28P1-201ENST00000613479 1221 ntBASIC16.78■□□□□ 0.28
CXCL12P48061 TEX28P2-201ENST00000617764 1221 ntBASIC16.78■□□□□ 0.28
CXCL12P48061 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
CXCL12P48061 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL12P48061 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL12P48061 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL12P48061 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms