Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HTTP42858 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.85■□□□□ 0.61
HTTP42858 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HTTP42858 LINC00304-203ENST00000565008 1864 ntBASIC18.85■□□□□ 0.61
HTTP42858 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.85■□□□□ 0.61
HTTP42858 HLA-H-201ENST00000383620 1096 ntBASIC18.85■□□□□ 0.61
HTTP42858 AL512361.1-201ENST00000554200 418 ntBASIC18.85■□□□□ 0.61
HTTP42858 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC18.85■□□□□ 0.61
HTTP42858 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.85■□□□□ 0.61
HTTP42858 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HTTP42858 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HTTP42858 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
HTTP42858 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.84■□□□□ 0.61
HTTP42858 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.84■□□□□ 0.61
HTTP42858 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.84■□□□□ 0.61
HTTP42858 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.84■□□□□ 0.61
HTTP42858 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HTTP42858 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.84■□□□□ 0.61
HTTP42858 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 FAM220BP-201ENST00000377689 816 ntBASIC18.84■□□□□ 0.61
HTTP42858 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.84■□□□□ 0.61
HTTP42858 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HTTP42858 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HTTP42858 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.84■□□□□ 0.61
HTTP42858 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
HTTP42858 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.83■□□□□ 0.61
HTTP42858 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.83■□□□□ 0.61
HTTP42858 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.83■□□□□ 0.61
HTTP42858 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
HTTP42858 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HTTP42858 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.83■□□□□ 0.6
HTTP42858 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
HTTP42858 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.83■□□□□ 0.6
HTTP42858 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.83■□□□□ 0.6
HTTP42858 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HTTP42858 AL079307.3-201ENST00000556114 283 ntBASIC18.83■□□□□ 0.6
HTTP42858 RN7SL190P-201ENST00000582519 257 ntBASIC18.83■□□□□ 0.6
HTTP42858 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.83■□□□□ 0.6
HTTP42858 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HTTP42858 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HTTP42858 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.82■□□□□ 0.6
HTTP42858 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HTTP42858 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.82■□□□□ 0.6
HTTP42858 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HTTP42858 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HTTP42858 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.82■□□□□ 0.6
HTTP42858 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.82■□□□□ 0.6
HTTP42858 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.82■□□□□ 0.6
HTTP42858 AC044860.1-202ENST00000559481 777 ntBASIC18.82■□□□□ 0.6
HTTP42858 AC015936.2-201ENST00000593177 259 ntBASIC18.82■□□□□ 0.6
HTTP42858 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.82■□□□□ 0.6
HTTP42858 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HTTP42858 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.82■□□□□ 0.6
HTTP42858 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 ELK2AP-201ENST00000392510 1007 ntBASIC18.81■□□□□ 0.6
HTTP42858 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.81■□□□□ 0.6
HTTP42858 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HTTP42858 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.81■□□□□ 0.6
HTTP42858 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HTTP42858 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms