Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 AC093525.9-201ENST00000624961 1746 ntBASIC13.19□□□□□ -0.3
HOXD3P31249 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD3P31249 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HOXD3P31249 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.18□□□□□ -0.3
HOXD3P31249 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 GGTLC5P-201ENST00000617623 998 ntBASIC13.18□□□□□ -0.3
HOXD3P31249 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HOXD3P31249 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD3P31249 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD3P31249 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD3P31249 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.17□□□□□ -0.3
HOXD3P31249 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXD3P31249 CEND1P1-201ENST00000451006 455 ntBASIC13.17□□□□□ -0.3
HOXD3P31249 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.17□□□□□ -0.3
HOXD3P31249 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.17□□□□□ -0.3
HOXD3P31249 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD3P31249 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD3P31249 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
HOXD3P31249 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD3P31249 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms