Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU1-129P-201ENST00000384064 167 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 U1.21-201ENST00000580816 167 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCA1P28370 AC023511.2-201ENST00000618803 211 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SMARCA1P28370 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 SNX33P1-201ENST00000592116 1762 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMARCA1P28370 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.43■□□□□ 0.7
SMARCA1P28370 RPSAP43-201ENST00000402237 625 ntBASIC19.43■□□□□ 0.7
SMARCA1P28370 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 UPF3AP3-201ENST00000420996 769 ntBASIC19.43■□□□□ 0.7
SMARCA1P28370 AC092474.2-201ENST00000424288 719 ntBASIC19.43■□□□□ 0.7
SMARCA1P28370 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCA1P28370 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCA1P28370 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMARCA1P28370 KRT8P39-201ENST00000396270 1433 ntBASIC19.42■□□□□ 0.7
SMARCA1P28370 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SMARCA1P28370 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCA1P28370 ACTG1P14-201ENST00000446382 1122 ntBASIC19.42■□□□□ 0.7
SMARCA1P28370 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCA1P28370 AL009183.1-201ENST00000603760 355 ntBASIC19.42■□□□□ 0.7
SMARCA1P28370 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMARCA1P28370 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SMARCA1P28370 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SMARCA1P28370 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCA1P28370 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCA1P28370 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCA1P28370 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCA1P28370 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCA1P28370 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 AC002056.1-201ENST00000395613 760 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.41■□□□□ 0.7
SMARCA1P28370 GPX1P2-201ENST00000429271 606 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCA1P28370 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCA1P28370 AC112482.1-201ENST00000492080 688 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.41■□□□□ 0.7
SMARCA1P28370 YBX1P5-201ENST00000509441 847 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 AC112191.1-201ENST00000523689 701 ntBASIC19.41■□□□□ 0.7
SMARCA1P28370 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCA1P28370 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SMARCA1P28370 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMARCA1P28370 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCA1P28370 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCA1P28370 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms