Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.02□□□□□ -0.32
HLA-DMBP28068 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
HLA-DMBP28068 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
HLA-DMBP28068 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DMBP28068 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
HLA-DMBP28068 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 KLF4P1-201ENST00000412782 1185 ntBASIC13.02□□□□□ -0.33
HLA-DMBP28068 AL450487.1-201ENST00000426799 995 ntBASIC13.02□□□□□ -0.33
HLA-DMBP28068 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 AP002383.4-201ENST00000442518 975 ntBASIC13.02□□□□□ -0.33
HLA-DMBP28068 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ABR-204ENST00000543210 1049 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 AC009533.2-201ENST00000543664 586 ntBASIC13.02□□□□□ -0.33
HLA-DMBP28068 ABR-217ENST00000572441 563 ntTSL 4 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 AC012313.10-201ENST00000623509 926 ntBASIC13.02□□□□□ -0.33
HLA-DMBP28068 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DMBP28068 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DMBP28068 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AL603756.1-201ENST00000606511 2163 ntBASIC13.01□□□□□ -0.33
HLA-DMBP28068 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 PPIH-202ENST00000372549 327 ntTSL 3 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 LINC00265-3P-201ENST00000447588 903 ntBASIC13.01□□□□□ -0.33
HLA-DMBP28068 VENTXP7-201ENST00000475503 772 ntBASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC124947.2-201ENST00000547118 1133 ntBASIC13.01□□□□□ -0.33
HLA-DMBP28068 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC073592.5-201ENST00000624854 528 ntBASIC13.01□□□□□ -0.33
HLA-DMBP28068 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DMBP28068 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms