Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL5A1P20908 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.12■□□□□ 0.17
COL5A1P20908 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 AL021920.2-201ENST00000624828 1351 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 KRT8P49-201ENST00000604166 1432 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.12■□□□□ 0.17
COL5A1P20908 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.12■□□□□ 0.17
COL5A1P20908 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.12■□□□□ 0.17
COL5A1P20908 AC010336.2-201ENST00000564226 506 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 LINC00896-202ENST00000609602 2128 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.12■□□□□ 0.17
COL5A1P20908 IGHV3-72-202ENST00000621503 303 ntBASIC16.12■□□□□ 0.17
COL5A1P20908 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.12■□□□□ 0.17
COL5A1P20908 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL5A1P20908 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.11■□□□□ 0.17
COL5A1P20908 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
COL5A1P20908 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.11■□□□□ 0.17
COL5A1P20908 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.11■□□□□ 0.17
COL5A1P20908 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.11■□□□□ 0.17
COL5A1P20908 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.11■□□□□ 0.17
COL5A1P20908 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.11■□□□□ 0.17
COL5A1P20908 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 AL606495.2-201ENST00000605867 535 ntBASIC16.11■□□□□ 0.17
COL5A1P20908 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.11■□□□□ 0.17
COL5A1P20908 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL5A1P20908 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.11■□□□□ 0.17
COL5A1P20908 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
COL5A1P20908 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 AL035456.1-201ENST00000456064 1369 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.1■□□□□ 0.17
COL5A1P20908 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 AL353705.2-201ENST00000428243 662 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.1■□□□□ 0.17
COL5A1P20908 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 AL359881.2-201ENST00000602973 570 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 AC008738.7-201ENST00000609744 511 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 AL008721.1-201ENST00000609964 604 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 AC003101.2-201ENST00000612557 442 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.1■□□□□ 0.17
COL5A1P20908 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms