Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 AC022211.2-201ENST00000585075 2527 ntBASIC16.97■□□□□ 0.31
MSH3P20585 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 AP002414.1-201ENST00000391405 1147 ntBASIC16.96■□□□□ 0.31
MSH3P20585 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.96■□□□□ 0.31
MSH3P20585 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH3P20585 RPS15P9-201ENST00000494093 319 ntBASIC16.96■□□□□ 0.31
MSH3P20585 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.96■□□□□ 0.31
MSH3P20585 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH3P20585 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH3P20585 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
MSH3P20585 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 AC124067.4-201ENST00000519691 2379 ntBASIC16.96■□□□□ 0.31
MSH3P20585 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH3P20585 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
MSH3P20585 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.96■□□□□ 0.3
MSH3P20585 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.96■□□□□ 0.3
MSH3P20585 PI4KAP1-204ENST00000612579 1703 ntBASIC16.96■□□□□ 0.3
MSH3P20585 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
MSH3P20585 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSH3P20585 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.95■□□□□ 0.3
MSH3P20585 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 AC243591.1-201ENST00000452967 1364 ntBASIC16.95■□□□□ 0.3
MSH3P20585 AC098831.1-202ENST00000438821 336 ntBASIC16.95■□□□□ 0.3
MSH3P20585 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
MSH3P20585 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.95■□□□□ 0.3
MSH3P20585 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.95■□□□□ 0.3
MSH3P20585 AC117500.6-201ENST00000624871 588 ntBASIC16.95■□□□□ 0.3
MSH3P20585 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSH3P20585 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSH3P20585 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.95■□□□□ 0.3
MSH3P20585 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH3P20585 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.94■□□□□ 0.3
MSH3P20585 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.94■□□□□ 0.3
MSH3P20585 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.94■□□□□ 0.3
MSH3P20585 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms