Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VCANP13611 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.38■□□□□ 0.37
VCANP13611 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 AP000997.3-201ENST00000623333 2250 ntBASIC17.38■□□□□ 0.37
VCANP13611 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 MIR4515-201ENST00000584082 81 ntBASIC17.38■□□□□ 0.37
VCANP13611 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VCANP13611 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VCANP13611 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCANP13611 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.37■□□□□ 0.37
VCANP13611 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 AC138627.1-207ENST00000641560 1006 ntBASIC17.37■□□□□ 0.37
VCANP13611 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 RPL13AP20-201ENST00000459725 609 ntBASIC17.37■□□□□ 0.37
VCANP13611 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.37■□□□□ 0.37
VCANP13611 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.37■□□□□ 0.37
VCANP13611 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VCANP13611 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.37■□□□□ 0.37
VCANP13611 AL365330.1-201ENST00000607459 531 ntBASIC17.37■□□□□ 0.37
VCANP13611 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VCANP13611 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.37■□□□□ 0.37
VCANP13611 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCANP13611 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.36■□□□□ 0.37
VCANP13611 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.36■□□□□ 0.37
VCANP13611 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.36■□□□□ 0.37
VCANP13611 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 CHMP4BP1-201ENST00000556017 588 ntBASIC17.36■□□□□ 0.37
VCANP13611 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VCANP13611 AC009542.2-202ENST00000619004 1067 ntBASIC17.36■□□□□ 0.37
VCANP13611 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 AC007969.1-201ENST00000433675 447 ntBASIC17.36■□□□□ 0.37
VCANP13611 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 BANF1P1-201ENST00000553684 263 ntBASIC17.36■□□□□ 0.37
VCANP13611 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.36■□□□□ 0.37
VCANP13611 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.36■□□□□ 0.37
VCANP13611 AC012569.1-201ENST00000591191 1524 ntBASIC17.36■□□□□ 0.37
VCANP13611 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCANP13611 SLC25A24P2-201ENST00000415059 510 ntBASIC17.36■□□□□ 0.37
VCANP13611 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.36■□□□□ 0.37
VCANP13611 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.36■□□□□ 0.37
VCANP13611 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms