Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ME2P1-201ENST00000426028 1970 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AC079328.2-201ENST00000561241 3354 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 PCED1CP-201ENST00000419887 785 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AC074051.2-201ENST00000565115 352 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AC092329.2-201ENST00000598402 547 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AC013467.2-201ENST00000605472 835 ntBASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMA1Q9UHB6 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 AL590787.1-201ENST00000568856 1315 ntBASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 TERC-201ENST00000602385 541 ntBASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LIMA1Q9UHB6 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 AC022188.1-201ENST00000620960 1664 ntBASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMA1Q9UHB6 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms