Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 TMEM14DP-201ENST00000422205 345 ntBASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 DOC2GP-202ENST00000514950 1163 ntBASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AC092552.1-201ENST00000547243 906 ntBASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 AC021097.1-201ENST00000607902 574 ntBASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF541Q9H0D2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 ZNF890P-202ENST00000530367 1156 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AC105021.1-202ENST00000570572 669 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 MIR4525-201ENST00000580000 75 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 CYP2A7P1-201ENST00000595391 815 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AL512343.1-201ENST00000605837 169 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 AL023806.1-201ENST00000603994 1649 ntBASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF541Q9H0D2 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 REXO1L6P-201ENST00000603433 1515 ntBASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 TTTY23B-201ENST00000442790 549 ntBASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 AC093004.1-201ENST00000508850 424 ntBASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 AL079307.3-201ENST00000556114 283 ntBASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 BTBD7P1-201ENST00000447253 1453 ntBASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF541Q9H0D2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ZNF541Q9H0D2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.14■□□□□ 0.82
ZNF541Q9H0D2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
ZNF541Q9H0D2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms