Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 PRKXP1-201ENST00000561423 1122 ntBASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AP006547.1-201ENST00000563435 692 ntBASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 MIR3907-201ENST00000579424 151 ntBASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AC005695.3-201ENST00000614522 232 ntBASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
COL25A1Q9BXS0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 AC068587.3-201ENST00000526613 355 ntBASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 RARRES2P5-201ENST00000564013 466 ntBASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 AC079336.7-201ENST00000623428 1078 ntBASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 RHOXF1P1-202ENST00000635473 501 ntBASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL25A1Q9BXS0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL25A1Q9BXS0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AL355864.2-201ENST00000447420 863 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AL133466.1-201ENST00000447582 150 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AC134698.3-201ENST00000523880 214 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 PTP4A1P2-201ENST00000546033 454 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AC141586.1-203ENST00000567242 366 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 NDUFV2P1-201ENST00000596415 907 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AC093010.1-201ENST00000473625 1624 ntBASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.95■□□□□ 0.3
COL25A1Q9BXS0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms