Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 AL590787.1-201ENST00000568856 1315 ntBASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPAP1Q9BWH6 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AP000344.2-201ENST00000512987 629 ntBASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AC004877.2-201ENST00000623941 599 ntBASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 TNRC18P3-201ENST00000441896 2691 ntBASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPAP1Q9BWH6 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 ACTG1P14-201ENST00000446382 1122 ntBASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 BCAR1-209ENST00000546196 1340 ntBASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPAP1Q9BWH6 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 CEND1P1-201ENST00000451006 455 ntBASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AL031432.2-201ENST00000566714 459 ntBASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AL928711.1-201ENST00000570165 459 ntBASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 AC092053.1-201ENST00000605787 1936 ntBASIC20.61■□□□□ 0.89
RPAP1Q9BWH6 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms