Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 AP006294.2-201ENST00000641667 209 ntBASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 AC132872.4-202ENST00000622924 2756 ntBASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 AC126177.1-201ENST00000547829 2218 ntBASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28BQ9BUN5 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 AL353593.2-201ENST00000602529 1483 ntBASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 AC009336.1-201ENST00000608941 1553 ntBASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 AL359075.1-203ENST00000462729 1002 ntBASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 TCAF2P1-201ENST00000291129 2421 ntBASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
CCDC28BQ9BUN5 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 MTHFR-217ENST00000641820 1569 ntBASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 HBZP1-201ENST00000354915 429 ntBASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms