Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 AC009533.2-201ENST00000543664 586 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 EGFEM1P-202ENST00000431685 1563 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 KRT17P6-201ENST00000453795 1220 ntBASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 STK19B-204ENST00000512515 211 ntBASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 INTS4P1-201ENST00000438455 1935 ntBASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 FLJ16779-201ENST00000612722 7638 ntBASIC17.43■□□□□ 0.38
TRIM56Q9BRZ2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 IGHV3-47-201ENST00000425060 335 ntBASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC073592.5-201ENST00000624854 528 ntBASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AL662844.4-201ENST00000606367 2838 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms