Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CDX2Q99626 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.55■□□□□ 0.4
CDX2Q99626 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX2Q99626 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.55■□□□□ 0.4
CDX2Q99626 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.55■□□□□ 0.4
CDX2Q99626 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.55■□□□□ 0.4
CDX2Q99626 RNA5SP410-201ENST00000516285 106 ntBASIC17.55■□□□□ 0.4
CDX2Q99626 AL365330.1-201ENST00000607459 531 ntBASIC17.55■□□□□ 0.4
CDX2Q99626 LINC00896-202ENST00000609602 2128 ntBASIC17.55■□□□□ 0.4
CDX2Q99626 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX2Q99626 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX2Q99626 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.54■□□□□ 0.4
CDX2Q99626 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.54■□□□□ 0.4
CDX2Q99626 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.54■□□□□ 0.4
CDX2Q99626 RRP7BP-205ENST00000566851 833 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.54■□□□□ 0.4
CDX2Q99626 AC015967.2-201ENST00000624092 234 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 AC006435.4-201ENST00000625037 234 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 AL356737.1-201ENST00000634391 234 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 AL033527.5-202ENST00000641632 1098 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 CLK3P2-201ENST00000427566 1453 ntBASIC17.54■□□□□ 0.4
CDX2Q99626 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX2Q99626 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CDX2Q99626 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CDX2Q99626 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX2Q99626 TOP3BP1-201ENST00000420768 1380 ntBASIC17.53■□□□□ 0.4
CDX2Q99626 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.53■□□□□ 0.4
CDX2Q99626 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.53■□□□□ 0.4
CDX2Q99626 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.53■□□□□ 0.4
CDX2Q99626 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
CDX2Q99626 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.53■□□□□ 0.4
CDX2Q99626 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CDX2Q99626 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDX2Q99626 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.53■□□□□ 0.4
CDX2Q99626 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.52■□□□□ 0.4
CDX2Q99626 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms