Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 RNA5SP421-201ENST00000516864 134 ntBASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 LINC00628-201ENST00000628516 1289 ntBASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 AC105339.1-204ENST00000636249 355 ntBASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 EGFEM1P-202ENST00000431685 1563 ntBASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDDC3Q8N4P3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 AC002056.1-201ENST00000395613 760 ntBASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 MIR4515-201ENST00000584082 81 ntBASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 GNAS-203ENST00000306120 1878 ntBASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 AC018470.1-201ENST00000624790 3129 ntBASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDDC3Q8N4P3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms