Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 AL133373.2-201ENST00000623187 2828 ntBASIC14.02□□□□□ -0.16
VPS13CQ709C8 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.02□□□□□ -0.16
VPS13CQ709C8 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.02□□□□□ -0.16
VPS13CQ709C8 AL031055.1-201ENST00000606362 631 ntBASIC14.02□□□□□ -0.16
VPS13CQ709C8 AL590560.3-201ENST00000623350 461 ntBASIC14.02□□□□□ -0.16
VPS13CQ709C8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
VPS13CQ709C8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13CQ709C8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
VPS13CQ709C8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
VPS13CQ709C8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13CQ709C8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13CQ709C8 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13CQ709C8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13CQ709C8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13CQ709C8 AL671710.1-201ENST00000610245 2349 ntBASIC14.02□□□□□ -0.17
VPS13CQ709C8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 RPSAP52-203ENST00000622976 1023 ntBASIC14.02□□□□□ -0.17
VPS13CQ709C8 COX11-210ENST00000639671 696 ntBASIC14.02□□□□□ -0.17
VPS13CQ709C8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13CQ709C8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC092068.3-201ENST00000587894 2016 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AL023806.1-201ENST00000603994 1649 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AL512638.1-201ENST00000457493 794 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC073439.1-201ENST00000624121 1774 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AL391825.1-201ENST00000457671 1364 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC142381.1-201ENST00000426099 345 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC105233.2-201ENST00000523697 349 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 AF228730.5-201ENST00000530288 346 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 BANF1P1-201ENST00000553684 263 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CTBP2P3-201ENST00000585629 1255 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 RN7SL837P-201ENST00000463010 287 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 AL583810.1-201ENST00000553344 1045 ntBASIC14.01□□□□□ -0.17
VPS13CQ709C8 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13CQ709C8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13CQ709C8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14□□□□□ -0.17
VPS13CQ709C8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14□□□□□ -0.17
VPS13CQ709C8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14□□□□□ -0.17
VPS13CQ709C8 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
VPS13CQ709C8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14□□□□□ -0.17
VPS13CQ709C8 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13CQ709C8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms