Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 AP002414.3-201ENST00000589352 1468 ntBASIC18.4■□□□□ 0.54
KRT39Q6A163 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.4■□□□□ 0.54
KRT39Q6A163 AC011676.5-201ENST00000624864 2660 ntBASIC18.4■□□□□ 0.54
KRT39Q6A163 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 MRPL3P1-201ENST00000400109 1033 ntBASIC18.4■□□□□ 0.54
KRT39Q6A163 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 AL031284.1-201ENST00000419297 478 ntBASIC18.4■□□□□ 0.54
KRT39Q6A163 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.4■□□□□ 0.54
KRT39Q6A163 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.4■□□□□ 0.54
KRT39Q6A163 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
KRT39Q6A163 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
KRT39Q6A163 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
KRT39Q6A163 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.4■□□□□ 0.54
KRT39Q6A163 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
KRT39Q6A163 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
KRT39Q6A163 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
KRT39Q6A163 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.39■□□□□ 0.54
KRT39Q6A163 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.39■□□□□ 0.53
KRT39Q6A163 AC087163.2-201ENST00000457299 853 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.39■□□□□ 0.53
KRT39Q6A163 AL662844.1-201ENST00000546340 181 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 AC008667.4-201ENST00000607370 168 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 GGTLC5P-201ENST00000617623 998 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.39■□□□□ 0.53
KRT39Q6A163 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.39■□□□□ 0.53
KRT39Q6A163 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 KRT8P49-201ENST00000604166 1432 ntBASIC18.39■□□□□ 0.53
KRT39Q6A163 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.39■□□□□ 0.53
KRT39Q6A163 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
KRT39Q6A163 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
KRT39Q6A163 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.38■□□□□ 0.53
KRT39Q6A163 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.38■□□□□ 0.53
KRT39Q6A163 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 AP002490.2-201ENST00000524791 560 ntBASIC18.38■□□□□ 0.53
KRT39Q6A163 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 SLC25A6P4-201ENST00000586535 553 ntBASIC18.38■□□□□ 0.53
KRT39Q6A163 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.38■□□□□ 0.53
KRT39Q6A163 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms