Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
VPS13DQ5THJ4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AC092053.1-201ENST00000605787 1936 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 COX11-210ENST00000639671 696 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AC087289.5-201ENST00000586076 3175 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AL671710.1-201ENST00000610245 2349 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 ELK1P1-201ENST00000485699 580 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 EGFEM1P-202ENST00000431685 1563 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 AC008735.3-201ENST00000596646 500 ntBASIC11.28□□□□□ -0.6
VPS13DQ5THJ4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 SLC7A15P-201ENST00000424028 1363 ntBASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 AL589739.1-201ENST00000607720 493 ntBASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 CDC14C-201ENST00000428251 1719 ntBASIC11.27□□□□□ -0.6
VPS13DQ5THJ4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC11.27□□□□□ -0.61
VPS13DQ5THJ4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13DQ5THJ4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC11.27□□□□□ -0.61
VPS13DQ5THJ4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
VPS13DQ5THJ4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms