Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 AL353732.1-201ENST00000569618 1459 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AL592309.1-201ENST00000443127 649 ntBASIC18.06■□□□□ 0.48
USP41Q3LFD5 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC079140.1-201ENST00000508039 487 ntBASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC011467.4-201ENST00000594891 528 ntBASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC093512.1-201ENST00000617969 520 ntBASIC18.06■□□□□ 0.48
USP41Q3LFD5 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 AC016396.2-201ENST00000562575 1417 ntBASIC18.06■□□□□ 0.48
USP41Q3LFD5 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP41Q3LFD5 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
USP41Q3LFD5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 EGFEM1P-202ENST00000431685 1563 ntBASIC18.05■□□□□ 0.48
USP41Q3LFD5 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 AC243562.1-201ENST00000560672 389 ntBASIC18.05■□□□□ 0.48
USP41Q3LFD5 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 AL135744.1-201ENST00000565098 629 ntBASIC18.05■□□□□ 0.48
USP41Q3LFD5 AC092364.2-202ENST00000597012 1073 ntBASIC18.05■□□□□ 0.48
USP41Q3LFD5 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.05■□□□□ 0.48
USP41Q3LFD5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP41Q3LFD5 AC099398.1-201ENST00000567919 2776 ntBASIC18.05■□□□□ 0.48
USP41Q3LFD5 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 AC009053.2-201ENST00000563701 2365 ntBASIC18.04■□□□□ 0.48
USP41Q3LFD5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.04■□□□□ 0.48
USP41Q3LFD5 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP41Q3LFD5 HCG4-201ENST00000418983 998 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms