Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTC1Q2NKJ3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CTC1Q2NKJ3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTC1Q2NKJ3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.21■□□□□ 0.5
CTC1Q2NKJ3 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CTC1Q2NKJ3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CTC1Q2NKJ3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 MIR943-201ENST00000401286 94 ntBASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 ACTG1P4-201ENST00000425123 1122 ntBASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 TUBB3P1-201ENST00000405796 1332 ntBASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTC1Q2NKJ3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 REXO1L9P-201ENST00000604264 2108 ntBASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 FAM58DP-201ENST00000428076 619 ntBASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.19■□□□□ 0.5
CTC1Q2NKJ3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 BX276092.7-203ENST00000637198 1536 ntBASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CTC1Q2NKJ3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms