Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.75■□□□□ 0.43
CDH6P55285 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.75■□□□□ 0.43
CDH6P55285 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CDH6P55285 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CDH6P55285 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
CDH6P55285 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.74■□□□□ 0.43
CDH6P55285 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDH6P55285 PCDHB17P-201ENST00000539533 2393 ntBASIC17.74■□□□□ 0.43
CDH6P55285 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH6P55285 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CDH6P55285 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH6P55285 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 SCARNA2-201ENST00000458748 420 ntBASIC17.74■□□□□ 0.43
CDH6P55285 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.74■□□□□ 0.43
CDH6P55285 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.74■□□□□ 0.43
CDH6P55285 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
CDH6P55285 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.74■□□□□ 0.43
CDH6P55285 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH6P55285 MTDHP4-201ENST00000600287 670 ntBASIC17.74■□□□□ 0.43
CDH6P55285 AL589182.2-201ENST00000619332 1049 ntBASIC17.74■□□□□ 0.43
CDH6P55285 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH6P55285 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH6P55285 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH6P55285 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH6P55285 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 AP002414.1-201ENST00000391405 1147 ntBASIC17.73■□□□□ 0.43
CDH6P55285 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.73■□□□□ 0.43
CDH6P55285 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH6P55285 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.73■□□□□ 0.43
CDH6P55285 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH6P55285 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 AL139424.1-201ENST00000607572 797 ntBASIC17.73■□□□□ 0.43
CDH6P55285 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 AC243591.1-201ENST00000452967 1364 ntBASIC17.73■□□□□ 0.43
CDH6P55285 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH6P55285 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH6P55285 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH6P55285 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH6P55285 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH6P55285 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.73■□□□□ 0.43
CDH6P55285 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH6P55285 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH6P55285 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CDH6P55285 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CDH6P55285 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CDH6P55285 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH6P55285 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CDH6P55285 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.72■□□□□ 0.43
CDH6P55285 AC139887.3-201ENST00000568585 713 ntBASIC17.72■□□□□ 0.43
CDH6P55285 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH6P55285 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms