Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.96■□□□□ 0.95
NUP98P52948 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
NUP98P52948 AL671710.1-201ENST00000610245 2349 ntBASIC20.96■□□□□ 0.95
NUP98P52948 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.96■□□□□ 0.95
NUP98P52948 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
NUP98P52948 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.96■□□□□ 0.95
NUP98P52948 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.96■□□□□ 0.95
NUP98P52948 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.96■□□□□ 0.95
NUP98P52948 SERBP1P5-201ENST00000510079 1181 ntBASIC20.96■□□□□ 0.95
NUP98P52948 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 AC005225.4-201ENST00000557330 545 ntBASIC20.96■□□□□ 0.95
NUP98P52948 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NUP98P52948 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.96■□□□□ 0.95
NUP98P52948 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.96■□□□□ 0.95
NUP98P52948 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.96■□□□□ 0.95
NUP98P52948 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.96■□□□□ 0.95
NUP98P52948 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NUP98P52948 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NUP98P52948 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NUP98P52948 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.95■□□□□ 0.94
NUP98P52948 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.95■□□□□ 0.94
NUP98P52948 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
NUP98P52948 AL080243.2-201ENST00000418783 582 ntBASIC20.95■□□□□ 0.94
NUP98P52948 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.95■□□□□ 0.94
NUP98P52948 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.95■□□□□ 0.94
NUP98P52948 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.95■□□□□ 0.94
NUP98P52948 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.95■□□□□ 0.94
NUP98P52948 AC013467.2-201ENST00000605472 835 ntBASIC20.95■□□□□ 0.94
NUP98P52948 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.95■□□□□ 0.94
NUP98P52948 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NUP98P52948 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.95■□□□□ 0.94
NUP98P52948 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.95■□□□□ 0.94
NUP98P52948 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NUP98P52948 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
NUP98P52948 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 AC027369.6-201ENST00000525520 931 ntBASIC20.94■□□□□ 0.94
NUP98P52948 AF228730.6-201ENST00000641497 218 ntBASIC20.94■□□□□ 0.94
NUP98P52948 AC084121.3-201ENST00000641716 218 ntBASIC20.94■□□□□ 0.94
NUP98P52948 AC105233.6-201ENST00000642093 218 ntBASIC20.94■□□□□ 0.94
NUP98P52948 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NUP98P52948 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.94■□□□□ 0.94
NUP98P52948 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
NUP98P52948 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.94■□□□□ 0.94
NUP98P52948 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.94■□□□□ 0.94
NUP98P52948 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.94■□□□□ 0.94
NUP98P52948 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.94■□□□□ 0.94
NUP98P52948 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.94■□□□□ 0.94
NUP98P52948 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NUP98P52948 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NUP98P52948 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.93■□□□□ 0.94
NUP98P52948 AC092053.1-201ENST00000605787 1936 ntBASIC20.93■□□□□ 0.94
NUP98P52948 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 SPDYE22P-201ENST00000582158 798 ntBASIC20.93■□□□□ 0.94
NUP98P52948 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 AC018529.1-201ENST00000613063 361 ntBASIC20.93■□□□□ 0.94
NUP98P52948 TEX28P1-201ENST00000613479 1221 ntBASIC20.93■□□□□ 0.94
NUP98P52948 TEX28P2-201ENST00000617764 1221 ntBASIC20.93■□□□□ 0.94
NUP98P52948 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 PP12613-201ENST00000424958 2230 ntBASIC20.93■□□□□ 0.94
NUP98P52948 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
NUP98P52948 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
NUP98P52948 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
NUP98P52948 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NUP98P52948 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms