Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CTCFP49711 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC19.64■□□□□ 0.73
CTCFP49711 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.64■□□□□ 0.73
CTCFP49711 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.64■□□□□ 0.73
CTCFP49711 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 AC007613.1-201ENST00000572811 2597 ntBASIC19.63■□□□□ 0.73
CTCFP49711 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CTCFP49711 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CTCFP49711 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.63■□□□□ 0.73
CTCFP49711 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.63■□□□□ 0.73
CTCFP49711 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CTCFP49711 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CTCFP49711 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.63■□□□□ 0.73
CTCFP49711 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTCFP49711 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
CTCFP49711 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CTCFP49711 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 WASH6P-202ENST00000359512 1437 ntBASIC19.62■□□□□ 0.73
CTCFP49711 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.62■□□□□ 0.73
CTCFP49711 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.62■□□□□ 0.73
CTCFP49711 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.62■□□□□ 0.73
CTCFP49711 AC093004.1-201ENST00000508850 424 ntBASIC19.62■□□□□ 0.73
CTCFP49711 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 AC135586.1-201ENST00000539323 574 ntBASIC19.62■□□□□ 0.73
CTCFP49711 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.62■□□□□ 0.73
CTCFP49711 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 AC007431.3-201ENST00000623221 587 ntBASIC19.62■□□□□ 0.73
CTCFP49711 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CTCFP49711 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CTCFP49711 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 AL023806.1-201ENST00000603994 1649 ntBASIC19.62■□□□□ 0.73
CTCFP49711 AC020763.4-201ENST00000623414 4170 ntBASIC19.62■□□□□ 0.73
CTCFP49711 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTCFP49711 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CTCFP49711 AC009113.1-201ENST00000570267 2443 ntBASIC19.61■□□□□ 0.73
CTCFP49711 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CTCFP49711 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.61■□□□□ 0.73
CTCFP49711 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.61■□□□□ 0.73
CTCFP49711 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 AL583810.1-201ENST00000553344 1045 ntBASIC19.61■□□□□ 0.73
CTCFP49711 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.61■□□□□ 0.73
CTCFP49711 AC008735.3-201ENST00000596646 500 ntBASIC19.61■□□□□ 0.73
CTCFP49711 AL844908.2-201ENST00000609461 460 ntBASIC19.61■□□□□ 0.73
CTCFP49711 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms