Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SHMT2P34897 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.74■□□□□ 0.27
SHMT2P34897 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
SHMT2P34897 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 GPR89P-201ENST00000407924 1495 ntBASIC16.73■□□□□ 0.27
SHMT2P34897 AP002414.3-201ENST00000589352 1468 ntBASIC16.73■□□□□ 0.27
SHMT2P34897 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
SHMT2P34897 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SHMT2P34897 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SHMT2P34897 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
SHMT2P34897 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 AC073621.1-201ENST00000392730 636 ntBASIC16.73■□□□□ 0.27
SHMT2P34897 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 AC120114.3-201ENST00000611923 658 ntBASIC16.73■□□□□ 0.27
SHMT2P34897 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
SHMT2P34897 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHMT2P34897 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.73■□□□□ 0.27
SHMT2P34897 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SHMT2P34897 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.73■□□□□ 0.27
SHMT2P34897 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.73■□□□□ 0.27
SHMT2P34897 IL9RP2-201ENST00000423948 1312 ntBASIC16.72■□□□□ 0.27
SHMT2P34897 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.72■□□□□ 0.27
SHMT2P34897 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 AC098831.1-202ENST00000438821 336 ntBASIC16.72■□□□□ 0.27
SHMT2P34897 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.72■□□□□ 0.27
SHMT2P34897 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.72■□□□□ 0.27
SHMT2P34897 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.72■□□□□ 0.27
SHMT2P34897 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SHMT2P34897 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 AC006504.4-201ENST00000592118 1568 ntBASIC16.72■□□□□ 0.27
SHMT2P34897 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHMT2P34897 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
SHMT2P34897 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SHMT2P34897 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms