Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
BDNFP23560 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
BDNFP23560 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.93■□□□□ 0.46
BDNFP23560 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.93■□□□□ 0.46
BDNFP23560 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.93■□□□□ 0.46
BDNFP23560 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
BDNFP23560 AL691403.2-201ENST00000618460 490 ntBASIC17.93■□□□□ 0.46
BDNFP23560 C20orf181-201ENST00000623918 480 ntBASIC17.93■□□□□ 0.46
BDNFP23560 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
BDNFP23560 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
BDNFP23560 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
BDNFP23560 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
BDNFP23560 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BDNFP23560 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.93■□□□□ 0.46
BDNFP23560 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.92■□□□□ 0.46
BDNFP23560 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 DUX4L17-201ENST00000557360 1267 ntBASIC17.92■□□□□ 0.46
BDNFP23560 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.92■□□□□ 0.46
BDNFP23560 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.92■□□□□ 0.46
BDNFP23560 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.92■□□□□ 0.46
BDNFP23560 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
BDNFP23560 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.92■□□□□ 0.46
BDNFP23560 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
BDNFP23560 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.92■□□□□ 0.46
BDNFP23560 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BDNFP23560 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
BDNFP23560 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 AC092919.2-201ENST00000623631 1645 ntBASIC17.91■□□□□ 0.46
BDNFP23560 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
BDNFP23560 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 HTR5BP-201ENST00000430851 1154 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms