Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.62■□□□□ 0.57
CLDN3O15551 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CLDN3O15551 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.62■□□□□ 0.57
CLDN3O15551 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.62■□□□□ 0.57
CLDN3O15551 HCG4B-203ENST00000450128 991 ntBASIC18.62■□□□□ 0.57
CLDN3O15551 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
CLDN3O15551 SLC25A6P2-201ENST00000497974 877 ntBASIC18.62■□□□□ 0.57
CLDN3O15551 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.62■□□□□ 0.57
CLDN3O15551 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.62■□□□□ 0.57
CLDN3O15551 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 FRMD8P1-201ENST00000440433 1524 ntBASIC18.62■□□□□ 0.57
CLDN3O15551 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.62■□□□□ 0.57
CLDN3O15551 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CLDN3O15551 AC022211.2-201ENST00000585075 2527 ntBASIC18.62■□□□□ 0.57
CLDN3O15551 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN3O15551 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.62■□□□□ 0.57
CLDN3O15551 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CLDN3O15551 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.61■□□□□ 0.57
CLDN3O15551 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CLDN3O15551 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CLDN3O15551 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 AC002310.6-201ENST00000624451 1377 ntBASIC18.61■□□□□ 0.57
CLDN3O15551 PMS2P7-201ENST00000506558 1336 ntBASIC18.61■□□□□ 0.57
CLDN3O15551 AC129492.6-201ENST00000611383 1305 ntBASIC18.61■□□□□ 0.57
CLDN3O15551 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.61■□□□□ 0.57
CLDN3O15551 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.61■□□□□ 0.57
CLDN3O15551 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.61■□□□□ 0.57
CLDN3O15551 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN3O15551 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN3O15551 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.6■□□□□ 0.57
CLDN3O15551 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.6■□□□□ 0.57
CLDN3O15551 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
CLDN3O15551 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLDN3O15551 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.6■□□□□ 0.57
CLDN3O15551 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.6■□□□□ 0.57
CLDN3O15551 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CLDN3O15551 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLDN3O15551 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.6■□□□□ 0.57
CLDN3O15551 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms