Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 ELL2P1-201ENST00000413990 1906 ntBASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 FAM58CP-201ENST00000435741 640 ntBASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 AC091812.2-201ENST00000619081 385 ntBASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLCF1Q9UBD9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 RPS8P6-201ENST00000426177 609 ntBASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 DNAJB3-202ENST00000449667 1266 ntBASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AC005412.3-201ENST00000580309 715 ntBASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AL645728.2-201ENST00000641974 660 ntBASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.14■□□□□ 0.01
CLCF1Q9UBD9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AC018470.1-201ENST00000624790 3129 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms