Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 AC141586.5-201ENST00000624546 2050 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 FAM58DP-201ENST00000428076 619 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 AC004449.1-201ENST00000564240 433 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 RARRES2P8-201ENST00000566335 367 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PAAF1Q9BRP4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 FAM86C2P-203ENST00000528684 1004 ntBASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 MPDU1-223ENST00000582151 728 ntBASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 LINC00628-201ENST00000628516 1289 ntBASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 LINC02012-201ENST00000608206 1725 ntBASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 AC131009.4-201ENST00000624048 1740 ntBASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PAAF1Q9BRP4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 RNF165-205ENST00000588679 2904 ntBASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.49
PAAF1Q9BRP4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 RNU1-129P-201ENST00000384064 167 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AC092474.2-201ENST00000424288 719 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 SPCS2P4-201ENST00000436160 681 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AL592309.1-201ENST00000443127 649 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AC069335.1-201ENST00000489972 472 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 U1.21-201ENST00000580816 167 ntBASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AC009093.7-201ENST00000623853 1223 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms