Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USP28Q96RU2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 BX005266.1-201ENST00000473402 457 ntBASIC19.52■□□□□ 0.72
USP28Q96RU2 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.52■□□□□ 0.72
USP28Q96RU2 AC093458.2-201ENST00000623150 629 ntBASIC19.52■□□□□ 0.72
USP28Q96RU2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.52■□□□□ 0.72
USP28Q96RU2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
USP28Q96RU2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP28Q96RU2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP28Q96RU2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.52■□□□□ 0.71
USP28Q96RU2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
USP28Q96RU2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP28Q96RU2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.52■□□□□ 0.71
USP28Q96RU2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP28Q96RU2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.52■□□□□ 0.71
USP28Q96RU2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
USP28Q96RU2 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
USP28Q96RU2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 AL590787.1-201ENST00000568856 1315 ntBASIC19.51■□□□□ 0.71
USP28Q96RU2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.51■□□□□ 0.71
USP28Q96RU2 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.51■□□□□ 0.71
USP28Q96RU2 AL353135.1-201ENST00000606729 504 ntBASIC19.51■□□□□ 0.71
USP28Q96RU2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.51■□□□□ 0.71
USP28Q96RU2 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.51■□□□□ 0.71
USP28Q96RU2 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.51■□□□□ 0.71
USP28Q96RU2 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.51■□□□□ 0.71
USP28Q96RU2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP28Q96RU2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
USP28Q96RU2 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 ARMC10P1-201ENST00000313754 855 ntBASIC19.5■□□□□ 0.71
USP28Q96RU2 KRT16P4-201ENST00000453883 522 ntBASIC19.5■□□□□ 0.71
USP28Q96RU2 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.5■□□□□ 0.71
USP28Q96RU2 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.5■□□□□ 0.71
USP28Q96RU2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
USP28Q96RU2 AC010331.1-201ENST00000611423 582 ntBASIC19.5■□□□□ 0.71
USP28Q96RU2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.5■□□□□ 0.71
USP28Q96RU2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.5■□□□□ 0.71
USP28Q96RU2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.5■□□□□ 0.71
USP28Q96RU2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP28Q96RU2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms