Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 SLC25A1P3-201ENST00000395415 828 ntBASIC16.18■□□□□ 0.18
COL21A1Q96P44 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 ABCD1P5-201ENST00000445663 754 ntBASIC16.18■□□□□ 0.18
COL21A1Q96P44 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 AD001527.2-201ENST00000622994 785 ntBASIC16.18■□□□□ 0.18
COL21A1Q96P44 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 PCDH8P1-201ENST00000428983 2773 ntBASIC16.18■□□□□ 0.18
COL21A1Q96P44 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 KRT8P10-201ENST00000450021 1447 ntBASIC16.18■□□□□ 0.18
COL21A1Q96P44 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL21A1Q96P44 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL21A1Q96P44 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 IFNL4P1-201ENST00000607083 540 ntBASIC16.17■□□□□ 0.18
COL21A1Q96P44 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 DOC2GP-204ENST00000639052 2548 ntBASIC16.17■□□□□ 0.18
COL21A1Q96P44 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL21A1Q96P44 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL21A1Q96P44 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 AL353593.2-201ENST00000602529 1483 ntBASIC16.16■□□□□ 0.18
COL21A1Q96P44 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 AL162727.3-201ENST00000635661 2787 ntBASIC16.16■□□□□ 0.18
COL21A1Q96P44 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL21A1Q96P44 AL450487.1-201ENST00000426799 995 ntBASIC16.16■□□□□ 0.18
COL21A1Q96P44 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 KRT126P-201ENST00000549467 1181 ntBASIC16.16■□□□□ 0.18
COL21A1Q96P44 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.16■□□□□ 0.18
COL21A1Q96P44 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms