Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 TUBB8P12-201ENST00000308911 1335 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 TUBB7P-202ENST00000428444 1305 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 TUBB8P7-204ENST00000567960 1332 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 PCDHB17P-201ENST00000539533 2393 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AC073621.1-201ENST00000392730 636 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 PAWRP1-201ENST00000451083 565 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AC136632.2-201ENST00000512891 861 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AL160237.2-201ENST00000556165 472 ntBASIC13.21□□□□□ -0.29
CCDC140Q96MF4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
CCDC140Q96MF4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 RNF216P1-203ENST00000404404 2427 ntBASIC13.2□□□□□ -0.3
CCDC140Q96MF4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 RPS15P9-201ENST00000494093 319 ntBASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AC012640.2-201ENST00000561606 901 ntBASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AL773604.1-201ENST00000617417 272 ntBASIC13.2□□□□□ -0.3
CCDC140Q96MF4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 AC078925.2-201ENST00000624013 1973 ntBASIC13.2□□□□□ -0.3
CCDC140Q96MF4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC140Q96MF4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AGGF1P2-201ENST00000426656 2106 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 PI4KAP1-204ENST00000612579 1703 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AP002414.3-201ENST00000589352 1468 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms